PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00024656-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 59aa    MW: 6703.76 Da    PI: 7.1826
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00024656-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.24.4e-091446132
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmg 32
                      +g+W++eEd +l+d++++ G+g +W + ++++g
  PSME_00024656-RA 14 KGPWSPEEDSKLKDYINKCGTGgNWLALPEKIG 46
                      79***********************98888877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-10543IPR009057Homeodomain-like
SuperFamilySSF466899.36E-7944IPR009057Homeodomain-like
PROSITE profilePS500906.458945IPR017877Myb-like domain
PfamPF002491.6E-71446IPR001005SANT/Myb domain
CDDcd001672.83E-41646No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 59 aa     Download sequence    Send to blast
MGRAPCCDND KMKKGPWSPE EDSKLKDYIN KCGTGGNWLA LPEKIGMAFF INLIEWFHA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004288285.17e-22PREDICTED: transcription factor RAX3
SwissprotQ9FKL23e-23MYB36_ARATH; Transcription factor MYB36
TrEMBLD5ABB62e-21D5ABB6_PICSI; Putative uncharacterized protein
TrEMBLD7MNB92e-21D7MNB9_ARALL; Putative uncharacterized protein
STRINGAT5G57620.16e-21(Arabidopsis thaliana)
STRINGscaffold_802340.16e-21(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-24myb domain protein 36